User:Jhurley/sandbox - Revision history

Jhurley: /* Recommended Approach */

2026-04-14T19:58:21Z

‎Recommended Approach

Jhurley: /* Recommended Approach */

2026-04-13T22:30:42Z

‎Recommended Approach

Jhurley: /* Recommended Approach */

2026-04-13T22:27:59Z

‎Recommended Approach

Jhurley: /* Recommended Approach */

2026-04-13T22:13:20Z

‎Recommended Approach

Jhurley: /* Recommended Approach */

2026-04-09T20:10:49Z

‎Recommended Approach

Jhurley: /* Recommended Approach */

2026-04-09T20:00:39Z

‎Recommended Approach

Jhurley: /* Recommended Approach */

2026-04-09T19:38:29Z

‎Recommended Approach

Jhurley: /* System Components and Validation */

2026-04-09T19:35:38Z

‎System Components and Validation

Jhurley: /* Introduction */

2026-04-09T19:34:34Z

‎Introduction

Jhurley: /* Introduction */

2026-04-09T19:32:30Z

‎Introduction

@@ Line 38: / Line 38: @@
 where ''DA'' is the ferrous content from the dilute acid (1% HCl) extraction, ''XRD<sub><small>pyr</small></sub>'' is the pyrite content from XRD analysis, and ''XRD<sub><small>biotite</small></sub>'' is the biotite content from XRD analysis<ref name="SchaeferEtAl2025"/>.
-Abiotic dechlorination is unlikely to contribute to mitigating contaminant back-diffusion when reactive ferrous iron (Fe(II)<sub><small>r</small></sub>) concentrations are below 100 mg/kg (Figure 1). For Fe(II)<sub><small>r</small></sub> above 100 mg/kg, the first-order rate constant for PCE and TCE reductive dechlorination can be estimated using the correlation shown in Figure 1<ref name="SchaeferEtAl2018">Schaefer, C.E., Ho, P., Berns, E., Werth, C., 2018. Mechanisms for abiotic dechlorination of trichloroethene by ferrous minerals under oxic and anoxic conditions in natural sediments. Environmental Science and Technology, 52(23), pp.13747-13755. [https://doi.org/10.1021/acs.est.8b04108 doi: 10.1021/acs.est.8b04108]</ref><ref>Borden, R.C., Cha, K.Y., 2021. Evaluating the impact of back diffusion on groundwater cleanup time. Journal of Contaminant Hydrology, 243, Article 103889. [https://doi.org/10.1016/j.jconhyd.2021.103889 doi: 10.1016/j.jconhyd.2021]&nbsp; [[Media: BordenCha2021.pdf | Open Access Manuscript]]</ref>. The rate constant exhibits a strong positive correlation with the logarithm of reactive Fe(II) content (Pearson’s r = 0.82), with a slope of 4.7 × 10⁻⁸ L g⁻¹ d⁻¹ (log mg kg⁻¹)⁻¹.
+Abiotic dechlorination is unlikely to contribute to mitigating contaminant back-diffusion when reactive ferrous iron (Fe(II)<sub><small>r</small></sub>) concentrations are below 100 mg/kg (Figure 1). For Fe(II)<sub><small>r</small></sub> above 100 mg/kg, the first-order rate constant for PCE and TCE reductive dechlorination can be estimated using the correlation shown in Figure 1<ref name="SchaeferEtAl2018">Schaefer, C.E., Ho, P., Berns, E., Werth, C., 2018. Mechanisms for abiotic dechlorination of trichloroethene by ferrous minerals under oxic and anoxic conditions in natural sediments. Environmental Science and Technology, 52(23), pp.13747-13755. [https://doi.org/10.1021/acs.est.8b04108 doi: 10.1021/acs.est.8b04108]</ref><ref>Borden, R.C., Cha, K.Y., 2021. Evaluating the impact of back diffusion on groundwater cleanup time. Journal of Contaminant Hydrology, 243, Article 103889. [https://doi.org/10.1016/j.jconhyd.2021.103889 doi: 10.1016/j.jconhyd.2021]&nbsp; [[Media: BordenCha2021.pdf | Open Access Manuscript]]</ref>. The rate constant exhibits a strong positive correlation with the logarithm of reactive Fe(II) content (Pearson’s ''r'' = 0.82), with a slope of 4.7 × 10⁻⁸ L g⁻¹ d⁻¹ (log mg kg⁻¹)⁻¹.
 ==Study Design Considerations==

@@ Line 38: / Line 38: @@
 where ''DA'' is the ferrous content from the dilute acid (1% HCl) extraction, ''XRD<sub><small>pyr</small></sub>'' is the pyrite content from XRD analysis, and ''XRD<sub><small>biotite</small></sub>'' is the biotite content from XRD analysis<ref name="SchaeferEtAl2025"/>.
-Abiotic dechlorination is unlikely to contribute to mitigating contaminant back-diffusion when reactive ferrous iron (Fe(II)<sub><small>r</small></sub>) concentrations are below 100 mg/kg (Figure 1). For Fe(II)<sub><small>r</small></sub> above 100 mg/kg, the first-order rate constant for PCE and TCE reductive dechlorination can be estimated using the correlation shown in Figure 1
+Abiotic dechlorination is unlikely to contribute to mitigating contaminant back-diffusion when reactive ferrous iron (Fe(II)<sub><small>r</small></sub>) concentrations are below 100 mg/kg (Figure 1). For Fe(II)<sub><small>r</small></sub> above 100 mg/kg, the first-order rate constant for PCE and TCE reductive dechlorination can be estimated using the correlation shown in Figure 1<ref name="SchaeferEtAl2018">Schaefer, C.E., Ho, P., Berns, E., Werth, C., 2018. Mechanisms for abiotic dechlorination of trichloroethene by ferrous minerals under oxic and anoxic conditions in natural sediments. Environmental Science and Technology, 52(23), pp.13747-13755. [https://doi.org/10.1021/acs.est.8b04108 doi: 10.1021/acs.est.8b04108]</ref><ref>Borden, R.C., Cha, K.Y., 2021. Evaluating the impact of back diffusion on groundwater cleanup time. Journal of Contaminant Hydrology, 243, Article 103889. [https://doi.org/10.1016/j.jconhyd.2021.103889 doi: 10.1016/j.jconhyd.2021]&nbsp; [[Media: BordenCha2021.pdf | Open Access Manuscript]]</ref>. The rate constant exhibits a strong positive correlation with the logarithm of reactive Fe(II) content (Pearson’s r = 0.82), with a slope of 4.7 × 10⁻⁸ L g⁻¹ d⁻¹ (log mg kg⁻¹)⁻¹.
 ==Study Design Considerations==

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 Estimation of the abiotic reductive first-order rate constant for PCE and TCE is based on the “reactive” ferrous content in the clay. Reactive ferrous content (Fe(II)<sub>r</sub>) is estimated as shown in Equation 1:
-::'''Equation 1:'''&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <big>''Fe(II)<sub><small>r</small></sub> = DA + XRD<sub><small>pyr</small></sub> - XRD<sub><small>biotite</small></sub>''
+::'''Equation 1:'''&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <big>''Fe(II)<sub><small>r</small></sub> = DA + XRD<sub><small>pyr</small></sub> - XRD<sub><small>biotite</small></sub>''</big>
 where ''DA'' is the ferrous content from the dilute acid (1% HCl) extraction, ''XRD<sub><small>pyr</small></sub>'' is the pyrite content from XRD analysis, and ''XRD<sub><small>biotite</small></sub>'' is the biotite content from XRD analysis<ref name="SchaeferEtAl2025"/>.
 ==Study Design Considerations==

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 Clay samples should be collected within a few centimeters of the high-permeability interface, with optional additional sampling further inward. For mineralogical analysis, a defined interval may be collected and subsequently subsampled. To preserve sample integrity, exposure to air should be minimized during collection, transport, and handling. Homogenization should occur within an anaerobic chamber, and if subsamples are required for external analysis, they must be shipped in gas-tight, anaerobic containers.
-===Porewater and Surface Water Collection Sub-system===
+::'''Equation 1:'''&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <big>''Fe(II)<sub><small>r</small></sub> = DA + XRD<sub><small>pyr</small></sub> - XRD<sub><small>biotite</small></sub>''
-The Trident also includes an adjustable stopper plate, which forms a seal against the sediment and prevents the inadvertent dilution of porewater samples with surface water. (Figure 2). Preliminary laboratory results indicate that the Trident is extremely effective in collecting porewater samples with minimal surface water infiltration in sediments ranging from coarse sand to fine clay. Underwater cameras, sensors, passive samplers, and other auxiliary equipment can be attached to the Trident probe frame to provide supplemental data.
+where ''DA'' is the ferrous content from the dilute acid (1% HCl) extraction, ''XRD<sub><small>pyr</small></sub>'' is the pyrite content from XRD analysis, and ''XRD<sub><small>biotite</small></sub>'' is the biotite content from XRD analysis<ref name="SchaeferEtAl2025"/>.
 ==Study Design Considerations==

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 ==Recommended Approach==
 [[File: TranFig1.png | thumb | 600 px | Figure 1: First-order rate constants for abiotic reductive dechlorination of TCE under anaerobic conditions (data from this study and prior research)]]
-The&nbsp;latest&nbsp;iTIE&nbsp;prototype consists of an array of sorptive resins that differentially fractionate sampled water, and a series of corresponding flow-through organism chambers that receive the treated water ''in situ''. Resin treatments can be selected depending on the chemicals suspected to be present at each site to selectively sequester certain chemical of concern (CoC) classes from the whole water, leaving a smaller subset of chemicals in the resulting water fraction for chemical and toxicological characterization. Test organism species and life stages can also be chosen depending on factors including site characteristics and study goals. In the full iTIE protocol, site water is continuously sampled either from the sediment pore spaces or the water column at a site, gently oxygenated, diverted to different iTIE units for fractionation and organism exposure, and collected in sample bottles for off-site chemical analysis (Figure 1). All iTIE system components are housed within waterproof Pelican cases, which allow for ease of transport and temperature control.
+[[File: TranFig2.png | thumb | 600 px | Figure 2: Flowchart diagram of field screening procedures]]
 ===Porewater and Surface Water Collection Sub-system===

@@ Line 22: / Line 22: @@
 ==Recommended Approach==
-[[File: CraneFig1.png | thumb | 600 px | Figure 1: A schematic diagram of the iTIE system prototype. The system is divided into three sub-systems: 1) the Pore Water/Surface Water Collection Sub-System (blue); 2) the Pumping Sub-System (red); and 3) the iTIE Resin, Exposure, and Sampling Sub-System (green). Water first enters the system through the Pore Water/Surface Water Collection Sub-System. Porewater can be collected using Trident-style probes, or surface water can be collected using a simple weighted probe. The water is composited in a manifold before being pumped to the rest of the iTIE system by the booster pump. Once in the iTIE Resin, Exposure, and Sampling Sub-System, the water is gently oxygenated by the Oxygen Coil, separated from gas bubbles by the Drip Chamber, and diverted to separate iTIE Resin and Exposure Chambers (or iTIE units) by the Splitting Manifold. Water movement through each iTIE unit is controlled by a dedicated Regulation Pump. Finally, the water is gathered in Sample Collection bottles for analysis.]]
+[[File: TranFig1.png | thumb | 600 px | Figure 1: A schematic diagram of the iTIE system prototype. The system is divided into three sub-systems: 1) the Pore Water/Surface Water Collection Sub-System (blue); 2) the Pumping Sub-System (red); and 3) the iTIE Resin, Exposure, and Sampling Sub-System (green). Water first enters the system through the Pore Water/Surface Water Collection Sub-System. Porewater can be collected using Trident-style probes, or surface water can be collected using a simple weighted probe. The water is composited in a manifold before being pumped to the rest of the iTIE system by the booster pump. Once in the iTIE Resin, Exposure, and Sampling Sub-System, the water is gently oxygenated by the Oxygen Coil, separated from gas bubbles by the Drip Chamber, and diverted to separate iTIE Resin and Exposure Chambers (or iTIE units) by the Splitting Manifold. Water movement through each iTIE unit is controlled by a dedicated Regulation Pump. Finally, the water is gathered in Sample Collection bottles for analysis.]]
 The&nbsp;latest&nbsp;iTIE&nbsp;prototype consists of an array of sorptive resins that differentially fractionate sampled water, and a series of corresponding flow-through organism chambers that receive the treated water ''in situ''. Resin treatments can be selected depending on the chemicals suspected to be present at each site to selectively sequester certain chemical of concern (CoC) classes from the whole water, leaving a smaller subset of chemicals in the resulting water fraction for chemical and toxicological characterization. Test organism species and life stages can also be chosen depending on factors including site characteristics and study goals. In the full iTIE protocol, site water is continuously sampled either from the sediment pore spaces or the water column at a site, gently oxygenated, diverted to different iTIE units for fractionation and organism exposure, and collected in sample bottles for off-site chemical analysis (Figure 1). All iTIE system components are housed within waterproof Pelican cases, which allow for ease of transport and temperature control.

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 Cost-effective methods are needed to verify the occurrence of natural dechlorination processes and quantify their dechlorination rates in clays under ambient in situ conditions in order to reliably predict their long-term influence on plume longevity and mass discharge. However, accurately determining these rates is challenging due to slow reaction kinetics, the transient nature of transformation products, and the interplay of biotic and abiotic mechanisms within the clay matrix or at clay-sand interfaces. Tools capable of quantifying these reactions and assessing their role in mitigating plume persistence would be a significant aid for long-term site management.
-For reductive abiotic dechlorination under anoxic conditions, a 1% hydrochloric acid (HCl) extraction of a sample of native clay coupled with X-ray diffraction (XRD) data can be used as a screening level tool to estimate reductive dechlorination rate constants. These rate constants can be inserted into fate and transport models such as [[REMChlor – MD]]<ref>Falta, R., and Wang, W., 2017. A semi-analytical method for simulating matrix diffusion in numerical transport models. Journal of Contaminant Hydrology, 197, pp. 39-49. [https://doi.org/10.1016/j.jconhyd.2016.12.007 doi: 10.1016/j.jconhyd.2016.12.007]&nbsp; [[Media: FaltaWang2017.pdf | Open Access Manuscript]]</ref>ref>Kulkarni, P.R., Adamson, D.T., Popovic, J., Newell, C.J., 2022. Modeling a well-charactized perfluorooctane sulfate (PFOS) source and plume using the REMChlor-MD model to account for matrix diffusion. Journal of Contaminant Hydrology, 247, Article 103986. [https://doi.org/10.1016/j.jconhyd.2022.103986 doi: 10.1016/j.jconhyd.2022.103986]&nbsp; [[Media: KulkarniEtAl2022.pdf | Open Access Manuscript]]</ref> to quantify abiotic dechlorination impacts within clay aquitards on chlorinated solvent plumes. Thus, determination of the abiotic reductive dechlorination rate constant for a particular clayey soil can be readily utilized to provide a more accurate assessment of aquifer cleanup timeframes for groundwater plumes that are being sustained by contaminant back-diffusion.
+For reductive abiotic dechlorination under anoxic conditions, a 1% hydrochloric acid (HCl) extraction of a sample of native clay coupled with X-ray diffraction (XRD) data can be used as a screening level tool to estimate reductive dechlorination rate constants. These rate constants can be inserted into fate and transport models such as [[REMChlor - MD]]<ref>Falta, R., and Wang, W., 2017. A semi-analytical method for simulating matrix diffusion in numerical transport models. Journal of Contaminant Hydrology, 197, pp. 39-49. [https://doi.org/10.1016/j.jconhyd.2016.12.007 doi: 10.1016/j.jconhyd.2016.12.007]&nbsp; [[Media: FaltaWang2017.pdf | Open Access Manuscript]]</ref><ref>Kulkarni, P.R., Adamson, D.T., Popovic, J., Newell, C.J., 2022. Modeling a well-charactized perfluorooctane sulfate (PFOS) source and plume using the REMChlor-MD model to account for matrix diffusion. Journal of Contaminant Hydrology, 247, Article 103986. [https://doi.org/10.1016/j.jconhyd.2022.103986 doi: 10.1016/j.jconhyd.2022.103986]&nbsp; [[Media: KulkarniEtAl2022.pdf | Open Access Manuscript]]</ref> to quantify abiotic dechlorination impacts within clay aquitards on chlorinated solvent plumes. Thus, determination of the abiotic reductive dechlorination rate constant for a particular clayey soil can be readily utilized to provide a more accurate assessment of aquifer cleanup timeframes for groundwater plumes that are being sustained by contaminant back-diffusion.
 ==System Components and Validation==

@@ Line 17: / Line 17: @@
 ==Introduction==
-In waterways impacted by numerous naturally occurring and anthropogenic chemical stressors, it is crucial for environmental practitioners to be able to identify which chemical classes are causing the highest degrees of toxicity to aquatic life. Previously developed methods, including the Toxicity Identification Evaluation (TIE) protocol developed by the US Environmental Protection Agency (EPA)<ref>Norberg-King, T., Mount, D.I., Amato, J.R., Jensen, D.A., Thompson, J.A., 1992. Toxicity identification evaluation: Characterization of chronically toxic effluents: Phase I. Publication No. EPA/600/6-91/005F. U.S. Environmental Protection Agency, Office of Research and Development. [https://www.epa.gov/sites/default/files/2015-09/documents/owm0255.pdf Free Download from US EPA]&nbsp; [[Media: usepa1992.pdf | Report.pdf]]</ref>, can be confounded by sample manipulation artifacts and temporal limitations of ''ex situ'' organism exposures<ref name="BurtonEtAl2020"/>. These factors may disrupt causal linkages and mislead investigators during site characterization and management decision-making. The ''in situ'' Toxicity Identification Evaluation (iTIE) technology was developed to allow users to strengthen stressor-causality linkages and rank chemical classes of concern at impaired sites, with high degrees of ecological realism.
+Cost-effective methods are needed to verify the occurrence of natural dechlorination processes and quantify their dechlorination rates in clays under ambient in situ conditions in order to reliably predict their long-term influence on plume longevity and mass discharge. However, accurately determining these rates is challenging due to slow reaction kinetics, the transient nature of transformation products, and the interplay of biotic and abiotic mechanisms within the clay matrix or at clay-sand interfaces. Tools capable of quantifying these reactions and assessing their role in mitigating plume persistence would be a significant aid for long-term site management.
-The technology has undergone a series of improvements in recent years, with the most recent prototype being robust, operable in a wide variety of site conditions, and cost-effective compared to alternative site characterization methods<ref>Burton, G.A. Jr., Nordstrom, J.F., 2004. An in situ toxicity identification evaluation method part I: Laboratory validation. Environmental Toxicology and Chemistry, 23(12), pp. 2844-2850. [https://doi.org/10.1897/03-409.1 doi: 10.1897/03-409.1]</ref><ref>Burton, G.A. Jr., Nordstrom, J.F., 2004. An in situ toxicity identification evaluation method part II: Field validation. Environmental Toxicology and Chemistry, 23(12), pp. 2851-2855. [https://doi.org/10.1897/03-468.1 doi: 10.1897/03-468.1]</ref><ref name="BurtonEtAl2020"/><ref name="SteigmeyerEtAl2017"/>. The latest prototype can be used in any of the following settings: in marine, estuarine, or freshwater sites; to study surface water or sediment pore water; in shallow waters easily accessible by foot or in deep waters only accessible by pier or boat. It can be used to study sites impacted by a wide variety of stressors including ammonia, [[Metal and Metalloid Contaminants | metals]], pesticides, polychlorinated biphenyls (PCB), [[Polycyclic Aromatic Hydrocarbons (PAHs) | polycyclic aromatic hydrocarbons (PAH)]], and [[Perfluoroalkyl and Polyfluoroalkyl Substances (PFAS) | per- and polyfluoroalkyl substances (PFAS)]], among others. The technology is applicable to studies of acute toxicity via organism survival or of chronic toxicity via responses in growth, reproduction, or gene expression<ref name="BurtonEtAl2020"/>.
+For reductive abiotic dechlorination under anoxic conditions, a 1% hydrochloric acid (HCl) extraction of a sample of native clay coupled with X-ray diffraction (XRD) data can be used as a screening level tool to estimate reductive dechlorination rate constants. These rate constants can be inserted into fate and transport models such as [[REMChlor – MD]]<ref>Falta, R., and Wang, W., 2017. A semi-analytical method for simulating matrix diffusion in numerical transport models. Journal of Contaminant Hydrology, 197, pp. 39-49. [https://doi.org/10.1016/j.jconhyd.2016.12.007 doi: 10.1016/j.jconhyd.2016.12.007]&nbsp; [[Media: FaltaWang2017.pdf | Open Access Manuscript]]</ref>ref>Kulkarni, P.R., Adamson, D.T., Popovic, J., Newell, C.J., 2022. Modeling a well-charactized perfluorooctane sulfate (PFOS) source and plume using the REMChlor-MD model to account for matrix diffusion. Journal of Contaminant Hydrology, 247, Article 103986. [https://doi.org/10.1016/j.jconhyd.2022.103986 doi: 10.1016/j.jconhyd.2022.103986]&nbsp; [[Media: KulkarniEtAl2022.pdf | Open Access Manuscript]]</ref> to quantify abiotic dechlorination impacts within clay aquitards on chlorinated solvent plumes. Thus, determination of the abiotic reductive dechlorination rate constant for a particular clayey soil can be readily utilized to provide a more accurate assessment of aquifer cleanup timeframes for groundwater plumes that are being sustained by contaminant back-diffusion.
 ==System Components and Validation==